PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30169.m006244
Common NameLOC8280997, RCOM_1583130
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family C2H2
Protein Properties Length: 703aa    MW: 78963.3 Da    PI: 7.9809
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30169.m006244genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.000247798223
                   EETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                   kC +C++ F ++ n++rHir+H
  30169.m006244 77 KCDKCSREFCSSINYRRHIRVH 98
                   7********************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.36776103IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.3E-477107IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002807899IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 703 aa     Download sequence    Send to blast
MPVPKLRASN DTDVMKTEEG HDSLDTVIRQ AIGKETSLSF SRAGDNPVQW FQLLHALDQQ  60
DLPGWPLLTP LKVQMQKCDK CSREFCSSIN YRRHIRVHHR LKKLDKDSAK NRELLGTFWD  120
KLSDDEAKEI LSFKDVALEE VPGSSVVKSL TALIRKPGFS SLPQYCLKAG SALLDIIQAR  180
PSRFPLSSVD LFSILDDASE KTFLCGTAAS MQKYIFDGEA GKIGLEMKNL VACTSFLVEQ  240
KLVKVWLADK DAEALRCQKL LVEEEEAAQR RQAELLERKR LKKLRQKEQK AKELRLVEQA  300
DLMERIDETV EAVSSAEQPC LLTASDSELH GLEALPDHFP SSVEPFQHPN TDEDVDLEIQ  360
AGSGSGNSDH GTSHIVEHRM SRRNNHRHLI ARWHMSPKSQ WNHVPNGFHA SENSQASRLS  420
TGQKHGNHRD LKSVPAINGN RKWSRKLKVG YNGDSLKTRA HKEAITQPDH NKKHKVLIGS  480
IPVTLGNCSQ QEGNNFDGAR DACMSEHQIP KKNIVQEKYN RPDSSHCSTS RSTIKLWRPV  540
SRNGIRSPML VENGDREFQV DGNDHNGSSE NCPSVYSVDD NYGGTGNSSP LLQERPYPKS  600
LWFSCQAATA FLMERWKEAI AAAHVKLVLS PELECMEIEN NYLVDIGESS EIKKCNLIGN  660
AENQFIEVGM HESSTSGAAK GRFKTRLEKS VKLKYIPKQK TVI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1276283ERKRLKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015571327.10.0PREDICTED: uncharacterized protein LOC8280997 isoform X1
RefseqXP_002513683.10.0PREDICTED: uncharacterized protein LOC8280997 isoform X1
TrEMBLB9RIW40.0B9RIW4_RICCO; Putative uncharacterized protein
STRINGPOPTR_0012s13010.10.0(Populus trichocarpa)
STRINGPOPTR_0015s12910.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45172739
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25610.11e-140C2H2-like zinc finger protein